config_emacs/config.org

#+TITLE: Emacs Configuration
#+AUTHOR: Marc Pohling
#+BABEL: :cache yes
#+PROPERTY: :header-args :tangle yes

* Personal Information
    
#+BEGIN_SRC emacs-lisp
  (setq user-full-name "Marc Pohling"
        user-mail-address "marc.pohling@googlemail.com")
#+END_SRC

I need a function to know what computer emacs is running on. The display width of 1152 pixel is an oddity of hyper-v and for my usecase specific enough to tell the machine.

#+BEGIN_SRC emacs-lisp
  (defvar my/whoami
    (if (string-equal user-login-name "POH")
        "work_remote"
      (if (equal (display-pixel-width) 1152)
          "work_hyperv"
        (if (string-equal system-type "gnu/linux")
        "home"))))
#+END_SRC
* Stuff to add / to fix
  - smartparens
    a sane default configuration for navigation, manipulation etc. is still necessary
  - Spaceline / Powerline or similar
    I want a pretty status bar!
  - Git gutter:
    Do some configuration to make it useful (see given source link in the [[*Git][Section]] of gutter)
    Maybe only enable it for modes where it is likely I use git?
  - Some webmode stuff
  - markdown:
    add hooks for certain file extensions, maybe add a smart way to start gfm-mode if markdown-file is in a git-project
  - move package dependend configurations inside the package configuration itself, like keymaps for magit
  - get rid of user-local and user-global and work with git-ignore
* Update config in a running config
  Two options:
  - reload the open file: M-x load-file, then press twice to accept
    the default filename, which is the currently opened
  - Point at the end of any sexp and press C-x C-e
* Customize default settings
  Keep the .emacs.d clean by moving user files into separate directories.
  - user-local: directory for machine specific files
  - user-global: directory for files which work on any machine
  - the backup and auto-save files go right to /tmp

#+BEGIN_SRC emacs-lisp
(defvar PATH_USER_LOCAL (expand-file-name "~/.emacs.d/user-local/"))
(defvar PATH_USER_GLOBAL (expand-file-name "~/.emacs.d/user-global/"))
(setq bookmark-default-file (concat PATH_USER_LOCAL "bookmarks"))
(setq recentf-save-file (concat PATH_USER_LOCAL "recentf"))
(setq custom-file (concat PATH_USER_LOCAL "custom.el"))                ;don't spam init.el with saved customize settings
(setq abbrev-file-name (concat PATH_USER_GLOBAL "abbrev_defs"))
(setq backup-directory-alist `((".*" . ,temporary-file-directory)))
(setq auto-save-file-name-transforms `((".*" ,temporary-file-directory)))

(setq save-abbrevs 'silently)                                          ; don't bother me with asking if new abbrevs should be saved
#+END_SRC

  These functions are useful. Activate them.
#+BEGIN_SRC emacs-lisp
  (put 'downcase-region 'disabled nil)
  (put 'upcase-region 'disabled nil)
  (put 'narrow-to-region 'disabled nil)
  (put 'dired-find-alternate-file 'disabled nil)
#+END_SRC

  Disable lock files, which cause trouble in e.g. lsp-mode
  
#+BEGIN_SRC emacs-lisp
(setq-default create-lockfiles nil)
#+END_SRC

  Answering just 'y' or 'n' should be enough.
  
#+BEGIN_SRC emacs-lisp
  (defalias 'yes-or-no-p 'y-or-n-p)
#+END_SRC

  Don't ask me if I want to load themes.
#+BEGIN_SRC emacs-lisp
  (setq custom-safe-themes t)
#+END_SRC

  Don't count two spaces after a period as the end of a sentence.
  Just one space is needed
#+BEGIN_SRC emacs-lisp
  (setq sentence-end-double-space nil)
#+END_SRC

  Scroll to the end / beginning of buffer before you throw an error
#+BEGIN_SRC emacs-lisp
  (setq scroll-error-top-bottom t)
#+END_SRC

  Delete the region when typing, just like as we expect nowadays.
#+BEGIN_SRC emacs-lisp
  (delete-selection-mode t)
#+END_SRC

  Auto-indent when pressing RET, just new-line when C-j
#+BEGIN_SRC emacs-lisp
  (define-key global-map (kbd "RET") 'newline-and-indent)
  (define-key global-map (kbd "C-j") 'newline)
#+END_SRC

  Set the default window size depending on the system emacs is running on.
  ;; TODO:
  ;; This size is only reasonable for linux@home
  ;; hyperv is way smaller, use fullscreen here
  ;; pm should be fullscreen, too
  
#+BEGIN_SRC emacs-lisp
(if (display-graphic-p)
    (pcase my/whoami
      ("home" (progn
                       (setq initial-frame-alist
                             '((width . 165)
                               (height . 70)))
                       (setq default-frame-alist
                             '((width . 165)
                               (height . 70)))))
      ("work_remote" (add-to-list 'initial-frame-alist '(fullscreen . maximized)))
      ("work_hyperv" (add-to-list 'initial-frame-alist '(fullscreen . maximized)))))
#+END_SRC
  
* Windows specific stuff
** Performance
   [[https://github.com/cbowdon/Config/blob/master/emacs/init.org][Got it from here]]
#+BEGIN_SRC emacs-lisp
(when (eq system-type 'windows-nt)
  (if (>= emacs-major-version 25)
      (remove-hook 'find-file-hooks 'vc-refresh-state)
    (remove-hook 'find-file-hooks 'vc-find-file-hook))
  (progn
    (setq gc-cons-threshold (* 511 1024 1024)
          gc-cons-percentage 0.5
          garbage-collection-messages t
          w32-get-true-file-attributes nil)
    (run-with-idle-timer 5 t #'garbage-collect)))
#+END_SRC

#+RESULTS:
: [nil 0 5 0 t garbage-collect nil idle 0]

  Hopefully this makes magit faster
#+BEGIN_SRC emacs-lisp
(when (eq system-type 'windows-nt)
  (setq w32-pipe-read-delay 0)
  (setq w32-get-true-file-attributes nil))
#+END_SRC

* Visuals
** Font
   Don't add the font in the work environment, which I am logged in as POH

#+BEGIN_SRC emacs-lisp
;  (set-face-attribute 'default nil
;                      :family "Hack Nerd Font Mono-14"
;                      :height 110
;                      :weight 'normal
;                      :width 'normal)
(set-face-font 'default "Hack Nerd Font Mono-10")
;  (pcase my/whoami
;    ("home" (set-face-font 'default "Hack Nerd Font Mono-10"))
  ;;  ("home"        (set-face-attribute 'default nil :font "Hack-10"))
;    ("work_hyperv" (set-face-attribute 'default nil :font "Hack-12"))
;  )
#+END_SRC

** Themes
*** Material Theme
 The [[https://github.com/cpaulik/emacs-material-theme][Material Theme]] comes in a dark and a light variant. Not too dark
 to be strenious though.
 b
#+BEGIN_SRC emacs-lisp
 (use-package material-theme
     :if (window-system)
     :defer t
     :ensure t
 )
#+END_SRC
*** Apropospriate Theme
 Variants dark and light

#+BEGIN_SRC emacs-lisp
 (use-package apropospriate-theme
     :if (window-system)
     :defer t
     :ensure t
 )
#+END_SRC

*** Ample Theme
    Variants:
    - ample
    - ample-flat
    - ample-light

#+BEGIN_SRC emacs-lisp
(use-package ample-theme
  :if (window-system)
  :defer t
  :ensure t
  :init
  (load-theme 'ample-flat t)
)
#+END_SRC
** Prettier Line Wraps
   By default there is no line wrapping. M-q actually modifies the buffer, which might not be wanted.
   So: enable visual wrapping and keep indentation if there are any.

#+BEGIN_SRC emacs-lisp
   (global-visual-line-mode)
   (diminish 'visual-line-mode)
   (use-package adaptive-wrap
     :ensure t
     :init
     (when (fboundp 'adaptive-wrap-prefix-mode)
       (defun my-activate-adaptive-wrap-prefix-mode ()
         "Toggle `visual-line-mode' and `adaptive-wrap-prefix-mode' simultaneously."
         (adaptive-wrap-prefix-mode (if visual-line-mode 1 -1)))
       (add-hook 'visual-line-mode-hook 'my-activate-adaptive-wrap-prefix-mode))
   )
#+END_SRC

** Mode Line
   Change the default mode line to something prettier. [[https://github.com/Malabarba/smart-mode-line][Source]]

#+BEGIN_SRC emacs-lisp
(use-package smart-mode-line
  :ensure t
  :config
  (tool-bar-mode -1)
  (setq sml/theme 'respectful)
  (setq sml/name-width 40)
  (setq sml/mode-width 'full)
  (set-face-attribute 'mode-line nil
                      :box nil)
  (sml/setup))
#+END_SRC

** Line numbers

#+BEGIN_SRC emacs-lisp
(use-package linum
  :ensure t
  :init
  (add-hook 'prog-mode-hook 'linum-mode))   
#+END_SRC

** Misc
   UTF-8 please, but don't mess with line endings.
 
#+BEGIN_SRC emacs-lisp
(setq locale-coding-system 'utf-8)
(set-terminal-coding-system 'utf-8)
(set-keyboard-coding-system 'utf-8)
(set-selection-coding-system 'utf-8)
(if (eq system-type 'windows-nt)
    (prefer-coding-system 'utf-8-dos)
  (prefer-coding-system 'utf-8))
#+END_SRC

   Turn off blinking cursor
 
#+BEGIN_SRC emacs-lisp
 (blink-cursor-mode -1)
#+END_SRC

#+BEGIN_SRC emacs-lisp
 (show-paren-mode t)
 (column-number-mode t)
 (setq uniquify-buffer-name-style 'forward)
#+END_SRC

   Avoid tabs in place of multiple spaces (they look bad in TeX) and show empty lines

#+BEGIN_SRC emacs-lisp
 (setq-default indent-tabs-mode nil)
 (setq-default indicate-empty-lines t)
#+END_SRC

   Smooth scrolling. Emacs tends to be jumpy, this should change it.

#+BEGIN_SRC emacs-lisp
(setq scroll-margin 5
      scroll-conservatively 10000
      scroll-preserve-screen-position 1
      scroll-step 1)
#+END_SRC

   Highlight current line

#+BEGIN_SRC emacs-lisp
(global-hl-line-mode t)
#+END_SRC

* Usability  
** which-key
   Greatly increases discovery of functions!
   Click [[https://github.com/justbur/emacs-which-key][here]] for source and more info.
   Info in Emacs: M-x customize-group which-key

#+BEGIN_SRC emacs-lisp
   (use-package which-key
       :ensure t
       :diminish which-key-mode
       :config
       (which-key-mode)
       (which-key-setup-side-window-right-bottom)
       (which-key-setup-minibuffer)
       (setq which-key-idle-delay 0.5)
   )
#+END_SRC
** Recentf
   Activate and configure recentf

#+BEGIN_SRC emacs-lisp
   (recentf-mode t)
   (setq recentf-max-saved-items 200)
#+END_SRC
** Hydra
   Hydra allows grouping of commands

#+BEGIN_SRC emacs-lisp
   (use-package hydra
       :ensure t
       :bind
       ("C-c f" . hydra-flycheck/body)
       ("C-c g" . hydra-git-gutter/body)
       :config
       (setq-default hydra-default-hint nil)
   )
#+END_SRC

** Evil
   So... Evil Mode might be worth a try

#+BEGIN_SRC emacs-lisp
   (use-package evil
     :ensure t
     :defer .1 ;; don't block emacs when starting, load evil immediately after startup
     :init
     (setq evil-want-integration nil) ;; required by evil-collection
     :config
     (evil-mode 1)) ;; for now deactivate per default
#+END_SRC

   Evil-collection is a bundle of configs for different modes.
   2018-05-01: evil collection causes error
   "Invalid function: with-helm-buffer"
#+BEGIN_SRC emacs-lisp
   ;(use-package evil-collection
   ;  :after evil
   ;  :ensure t
   ;  :config
   ;  (evil-collection-init))
#+END_SRC

   Evil-goggles give visual hints when editing texts, so it's more obvious what is actually happening. [[https://github.com/edkolev/evil-goggles][Source]]
  
#+BEGIN_SRC emacs-lisp
(use-package evil-goggles
  :after evil
  :ensure t
  :diminish evil-goggles-mode
  :config
  (evil-goggles-mode)
  (evil-goggles-use-diff-faces))
#+END_SRC
** General (keymapper)
   I just use general.el to define keys and keymaps. With it I can set leader keys and create keymaps for them. It also integrates well with which-key.
   [[https://github.com/noctuid/general.el][Source]]

#+BEGIN_SRC emacs-lisp
   (use-package general
     :ensure t
   )
#+END_SRC

** Custom key mappings
   Now some keymaps.
   If there is no map defined, it is considered the global key map.

#+BEGIN_SRC emacs-lisp
(general-define-key
 :states '(normal visual insert emacs)
 :prefix "SPC"
 :non-normal-prefix "M-SPC"
 "TAB" '(ivy-switch-buffer :which-key "prev buffer")
 "SPC" '(counsel-M-x :which-key "M-x")
 "g"   '(:ignore t :which-key "Git")
 "gs"  '(magit-status :which-key "git-status")
) 
#+END_SRC

   A map for org-mode
   
#+BEGIN_SRC emacs-lisp
   (general-define-key
    :states '(normal visual insert emacs)
    :keymaps 'org-mode-map
    :prefix "SPC"
    :non-normal-prefix "M-SPC"
    "t" '(counsel-org-tag :which-key "org-tag"))
#+END_SRC

   A map for dired, based on [[https://github.com/emacs-evil/evil-collection/blob/master/evil-collection-dired.el][evil-collection]]
#+BEGIN_SRC emacs-lisp
(general-define-key
 :states '(normal visual insert emacs)
 :keymaps 'dired-mode-map
 "q"  '(quit-window :which-key "quit-window")
 "j"  '(dired-next-line :which-key "next line")
 "k"  '(dired-previous-line :which-key "previous line")
 "D"  '(dired-do-delete :which-key "delete")
 "C"  '(dired-do-copy :which-key "copy")
 "t"  '(:ignore t :which-key "dir navigation")
 "td" '(dired-tree-down :which-key "tree down")
 "tu" '(dired-tree-up :which-key "tree up")
 "tn" '(dired-next-subdir :which-key "next subdir")
 "tp" '(dired-prev-subdir :which-key "previous subdir")
)
#+END_SRC

#+BEGIN_SRC emacs-lisp
(general-define-key
 :states '(normal)
 :keymaps 'lsp-ui-imenu-mode-map
 (kbd "RET")   '(lsp-ui-imenu--view :which-key "view")
 (kbd "M-RET") '(lsp-ui-imenu--visit :which-key "visit")
)
#+END_SRC
** List buffers
   Ibuffer is the improved version of list-buffers.
   Make ibuffer the default buffer lister. [[http://ergoemacs.org/emacs/emacs_buffer_management.html][Source]]
#+BEGIN_SRC emacs-lisp
   (defalias 'list-buffers 'ibuffer)
#+END_SRC

   Also auto refresh dired, but be quiet about it. [[http://whattheemacsd.com/sane-defaults.el-01.html][Source]]
#+BEGIN_SRC emacs-lisp
   (add-hook 'dired-mode-hook 'auto-revert-mode)
   (setq global-auto-revert-non-file-buffers t)
   (setq auto-revert-verbose nil)
#+END_SRC
** ivy / counsel / swiper
   Flx is required for fuzzy-matching
   Is it really necessary?
   BEGIN_SRC emacs-lisp
   (use-package flx)
   end_src

   Ivy displays a window with suggestions for hotkeys and M-x

#+BEGIN_SRC emacs-lisp
   (use-package ivy
       :ensure t
       :diminish
       (ivy-mode . "")                   ;; does not display ivy in the mode line
       :init
       (ivy-mode 1)
       :bind
       ("C-c C-r" . ivy-resume)
       :config
       (setq ivy-use-virtual-buffers t)  ;; recent files and bookmarks in ivy-switch-buffer
       (setq ivy-height 20)              ;; height of ivy window
       (setq ivy-count-format "%d/%d")   ;; current and total number
       (setq ivy-re-builders-alist       ;; regex replaces spaces with *
             '((t . ivy--regex-plus)))
   )
#+END_SRC

   The find-file replacement is nicer to navigate

#+BEGIN_SRC emacs-lisp
   (use-package counsel
       :ensure t
       :bind*                           ;; load counsel when pressed
       (("M-x"     . counsel-M-x)
        ("C-x C-f" . counsel-find-file)
        ("C-x C-r" . counsel-recentf)
        ("C-c C-f" . counsel-git)
        ("C-c h f" . counsel-describe-function)
        ("C-c h v" . counsel-describe-variable)
        ("M-i"     . counsel-imenu)
       )
   )
#+END_SRC

   Swiper ivy-enhances isearch

#+BEGIN_SRC emacs-lisp
   (use-package swiper
       :ensure t
       :bind
       (("C-s"     . swiper)
        ("C-c C-r" . ivy-resume)
       )
   )
#+END_SRC

   Ivy-Hydra adds stuff in minibuffer when you press C-o

#+BEGIN_SRC emacs-lisp
   (use-package ivy-hydra
     :ensure t)
#+END_SRC

** Helm
   This is just a try to see how it works differently.

#+BEGIN_SRC emacs-lisp
   (use-package helm
     :ensure t
     :init
     (helm-mode 1)
     :bind
   ;  (("M-x" . helm-M-x)
   ;   ("C-x C-f" . helm-find-files)
   ;   ("C-x C-r" . helm-recentf)
   ;   ("C-x b" . helm-buffers-list))
     :config
     (setq helm-buffers-fuzzy-matching t)
   )

   (use-package helm-descbinds
     :ensure t
     :bind
     ("C-h b" . helm-descbinds))

   (use-package helm-projectile
     :ensure t
     :config
     (helm-projectile-on))
#+END_SRC

** Undo
   Show an undo tree in a new buffer which can be navigated.
   
#+BEGIN_SRC emacs-lisp
(use-package undo-tree
  :ensure t
  :diminish undo-tree-mode
  :init
  (global-undo-tree-mode 1))
#+END_SRC

** Ido (currently inactive)
   better completion

#+BEGIN_SRC emacs-lisp
   ;(use-package ido
   ;    :init
   ;    (setq ido-enable-flex-matching t)
   ;    (setq ido-everywhere t)
   ;    (ido-mode t)
   ;    (use-package ido-vertical-mode
   ;        :ensure t
   ;        :defer t
   ;        :init
   ;        (ido-vertical-mode 1)
   ;        (setq ido-vertical-define-keys 'C-n-and-C-p-only)
   ;    )
   ;)
#+END_SRC

** imenu-list
   A minor mode to show imenu in a sidebar.
   Call imenu-list-smart-toggle.
   [[https://github.com/bmag/imenu-list][Source]]

#+BEGIN_SRC emacs-lisp
(use-package imenu-list
  :ensure t
  :config
  (setq imenu-list-focus-after-activation t
        imenu-list-auto-resize t
        imenu-list-position 'right)
  :bind
  (:map global-map
        ([f9]  . imenu-list-smart-toggle))
  )
#+END_SRC
** Treemacs
   A file manager comparable to neotree.
   [[https://github.com/Alexander-Miller/treemacs][Github]]

   2018-09-01: Treemacs needs emacs 25.2, debian stretch runs 25.1. Sucks.

   It has some requirements, which gets used here anyway:
   - ace-window
   - hydra
   - projectile
   - python

   I copied the configuration example from the github site.
   No idea what this executable-find is about.
   TODO check it out!
  
BEGIN_SRC emacs-lisp
   (use-package treemacs
     :ensure t
     :defer t
     :config
     (setq treemacs-collapse-dirs              (if (executable-find "python") 3 0)
           treemacs-file-event-delay           5000
           treemacs-follow-after-init          t
           treemacs-follow-recenter-distance   0.1
           treemacs-goto-tag-strategy          'refetch-index
           treemacs-indentation                2
           treemacs-indentation-string         " "
           treemacs-is-never-other-window      nil
           treemacs-no-png-images              nil
           treemacs-project-follow-cleanup     nil
           treemacs-recenter-after-file-follow nil
           treemacs-recenter-after-tag-follow  nil
           treemacs-show-hidden-files          t
           treemacs-silent-filewatch           nil
           treemacs-silent-refresh             nil
           treemacs-sorting                    'alphabetic-desc
           treemacs-tag-follow-cleanup         t
           treemacs-tag-follow-delay           1.5
           treemacs-width                      35)
     (treemacs-follow-mode t)
     (treemacs-filewatch-mode t)
     (pcase (cons (not (null (executable-find "git")))
                  (not (null (executable-find "python3"))))
       (`(t . t)
        (treemacs-git-mode 'extended))
       (`(t . _)
        (treemacs-git-mode 'simple)))
     :bind
     (:map global-map
           ([f8]        . treemacs))
   )
END_SRC

   Treemacs-Evil is necessary when using evil
BEGIN_SRC emacs-lisp
(use-package treemacs-evil
  :after treemacs evil
  :ensure t)
END_SRC

   Treemacs-projectile is useful for uhh.. TODO explain!

BEGIN_SRC emacs-lisp
(use-package treemacs-projectile
  :ensure t
  :after treemacs projectile
  :defer t
  :config
  (setq treemacs-header-function #'treemacs-projectile-create-header)
)
END_SRC

   TODO
   Hydrastuff or keybindings for functions:
   - treemacs-projectile
   - treemacs-projectile-toggle
   - treemacs-toggle
   - treemacs-bookmark
   - treemacs-find-file
   - treemacs-find-tag
 
** Window Handling
   Some tools to easen the navigation, creation and deletion of windows

*** Ace-Window

#+BEGIN_SRC emacs-lisp
    (use-package ace-window
      :ensure t
      :init
      (global-set-key (kbd "C-x o") 'ace-window)
    )
#+END_SRC

*** Windmove
    Windmove easens the navigation between windows.
    Here we are setting the default keybindings (shift+arrow)

    CURRENTLY NOT WORKING, defaults are blocked.
    Also not sure if necessary when using ace-window.
#+BEGIN_SRC emacs-lisp
    (use-package windmove
      :ensure t
      :config
      (windmove-default-keybindings)
    )
#+END_SRC

** Tramp
   With tramp you can handle remote files like local files.
   Usage example:
   C-x C-f /ssh:name@server:/path
   To open a file as sudo:
   C-x C-f /ssh:/name@server|sudo:name@server:/path
#+BEGIN_SRC emacs-lisp
(use-package tramp
  :ensure t
  )
#+END_SRC
** misc
   Visual feedback when using regexp on the buffer
#+BEGIN_SRC emacs-lisp
(use-package visual-regexp
  :ensure t
  :defer t
  :bind (("C-c r s" . query-replace)
         ("C-c r R" . vr/replace)
         ("C-c r r" . vr/query-replace)
         ("C-c r m" . vr/mc-mark)))
#+END_SRC
   Newline at the end of file

#+BEGIN_SRC emacs-lisp
(setq require-final-newline t)
#+END_SRC

   Delete the selection with a keypress

#+BEGIN_SRC emacs-lisp
(delete-selection-mode t)
#+END_SRC

   Remember the current location in a file

#+BEGIN_SRC emacs-lisp
(use-package saveplace
  :unless noninteractive
  :config
  (save-place-mode))
#+END_SRC

* Company Mode
Complete Anything!

Activate company and make it react nearly instantly

#+BEGIN_SRC emacs-lisp
 (use-package company
     :ensure t
     :config
     (setq-default company-minimum-prefix-length 1
                   company-tooltip-align-annotation t
                   company-tooltop-flip-when-above t
                   company-show-numbers t
                   company-idle-delay 0.1)
;     (define-key company-active-map (kbd "RET") nil)
     (company-tng-configure-default)
     :bind
     (:map company-active-map
           ("TAB" . company-complete-selection)
           ("<tab>" . company-complete-selection))
 )
#+END_SRC

For a nicer suggestion box: company-box ([[https://github.com/sebastiencs/company-box][Source]])
It is only available for emacs 26 and higher.

#+BEGIN_SRC emacs-lisp
(when (> emacs-major-version 25)
  (use-package company-box
    :ensure t
    :init
    (add-hook 'company-mode-hook 'company-box-mode)))
#+END_SRC


* Org Mode
** Installation
   Although org mode ships with Emacs, the latest version can be installed externally. The configuration here follows the [[http://orgmode.org/elpa.html][Org mode ELPA Installation instructions.]]
   Added a hook to complete org functions, company-capf is necessary for this


#+BEGIN_SRC emacs-lisp
(use-package org
    :ensure org-plus-contrib
    :init
    (add-hook 'org-mode-hook 'company/org-mode-hook)
)
(add-hook 'org-mode-hook 'company/org-mode-hook)

#+END_SRC

   To avoid problems executing source blocks out of the box. [[https://emacs.stackexchange.com/a/28604][Others have the same problem, too]]. The solution is to remove the .elc files form the package directory:

#+BEGIN_SRC shell
var ORG_DIR=(let* ((org-v (cadr (split-string (org-version nil t) "@"))) (len (length org-v))) (substring org-v 1 (- len 2)))
rm ${ORG_DIR}/*.elc
echo 'cleaned .elc from package directory'
#+END_SRC

** Setup
*** Paths
    Paths need to be different for work and home

#+BEGIN_SRC emacs-lisp
(pcase my/whoami
  ("work_remote"
   (progn
     (defvar PATH_ORG_FILES   "p:/Eigene Dateien/Notizen/")
     (defvar PATH_ORG_JOURNAL "p:/Eigene Dateien/Notizen/Journal/")
     (defvar PATH_START       "p:/Eigene Dateien/Notizen/"))
     (setq org-default-notes-file (concat PATH_ORG_FILES "notes.org"))
     (setq org-agenda-files (list(concat PATH_ORG_FILES "notes.org")
                                 (concat PATH_ORG_FILES "projects.org")
                                 (concat PATH_ORG_FILES "todo.org"))))
  ("home"
   (progn
     (defvar PATH_ORG_FILES_MOBILE "~/Archiv/Organisieren/mobile/")
     (defvar PATH_ORG_JOURNAL      "~/Archiv/Organisieren/Journal/")
     (defvar PATH_ORG_FILES        "~/Archiv/Organisieren/")
     (setq org-default-notes-file (concat PATH_ORG_FILES "notes.org"))
     ;; TODO: ignore notes.org, which shouldn't include any todos
;;     (setq org-agenda-file-regexp "'\\`[^.].*\\.org\\'")
     (setq org-agenda-files (list PATH_ORG_FILES PATH_ORG_FILES_MOBILE))))
)
(setq org-id-locations-file (concat PATH_USER_LOCAL ".org-id-locations"))
#+END_SRC

*** Settings
    Speed commands are a nice and quick way to perform certain actions while at the beginning of a heading. It's not activated by default.

    See the doc for speed keys by checking out the documentation for speed keys in Org mode.

#+BEGIN_SRC emacs-lisp
   (setq org-use-speed-commands t)
   (setq org-image-actual-width 550)
   (setq org-highlight-latex-and-related '(latex script entities))
#+END_SRC

   Hide emphasis markup (e.g. / ... / for italics, etc.)

#+BEGIN_SRC emacs-lisp
   (setq org-hide-emphasis-markers t)
#+END_SRC

   The default value for the org tag column is -77, which is weird for smaller width windows. I'd rather have the tags align horizontally with the header.
   45 is a good column number to do that.

#+BEGIN_SRC emacs-lisp
   (setq org-tags-column 45)
#+END_SRC

    Set the org-refile targets.
    TODO: change maxlevel if necessary

#+BEGIN_SRC emacs-lisp
(setq org-refile-targets '((org-agenda-files . (:maxlevel . 1))))
#+END_SRC
*** Org key bindings
    Set up some global key bindings that integrate with Org mode features

#+BEGIN_SRC emacs-lisp
 (bind-key "C-c l" 'org-store-link)
 (bind-key "C-c c" 'org-capture)
 (bind-key "C-c a" 'org-agenda)
#+END_SRC

Org overwrites RET and C-j, so I need to disable the rebinds
#+BEGIN_SRC emacs-lisp
 (define-key org-mode-map (kbd "RET") nil) ;;org-return
 (define-key org-mode-map (kbd "C-j") nil) ;;org-return-indent
#+END_SRC

*** Org agenda
    For a more detailed example [[https://github.com/sachac/.emacs.d/blob/83d21e473368adb1f63e582a6595450fcd0e787c/Sacha.org#org-agenda][see here]].

    Custom todo-keywords, depending on environment

#+BEGIN_SRC emacs-lisp
(pcase my/whoami
  ("work_remote")
  (setq org-todo-keywords
        '((sequence "OPEN" "TODO" "UNCLEAR" "|" "DONE" "IMPOSSIBLE")))
)
#+END_SRC

   Sort org agenda by deadline and priority

#+BEGIN_SRC emacs-lisp
   (setq org-agenda-sorting-strategy
         (quote
          ((agenda deadline-up priority-down)
           (todo priority-down category-keep)
           (tags priority-down category-keep)
           (search category-keep)))
   )
#+END_SRC

   Customize the org agenda

#+BEGIN_SRC emacs-lisp
   (defun my-org-skip-subtree-if-priority (priority)
     "Skip an agenda subtree if it has a priority of PRIORITY.

      PRIORITY may be one of the characters ?A, ?B, or ?C."
     (let ((subtree-end (save-excursion (org-end-of-subtree t)))
           (pri-value (* 1000 (- org-lowest-priority priority)))
           (pri-current (org-get-priority (thing-at-point 'line t))))
       (if (= pri-value pri-current)
           subtree-end
         nil)))

   (setq org-agenda-custom-commands
         '(("c" "Simple agenda view"
            ((tags "PRIORITY=\"A\""
                   ((org-agenda-skip-function '(org-agenda-skip-entry-if 'todo 'done))
                    (org-agenda-overriding-header "Hohe Priorität:")))
             (agenda ""
                     ((org-agenda-span 7)
                      (org-agenda-start-on-weekday nil)
                      (org-agenda-overriding-header "Nächsten 7 Tage:")))
             (alltodo ""
                      ((org-agenda-skip-function '(or (my-org-skip-subtree-if-priority ?A)
                                                      (org-agenda-skip-if nil '(scheduled deadline))))
                      (org-agenda-overriding-header "Sonstige Aufgaben:"))))))
   )
#+END_SRC

*** Org Capture
    The basic format is:
    hotkey - name - type - location - content
    For todos a prompt for the title is demanded. This made it possible to place the cursor for the content to the right position. Just typing, C-c C-c, done!
    
#+BEGIN_SRC emacs-lisp
(pcase my/whoami
  ("home"
   (setq org-capture-templates
         `(("n" "note"        entry (org-default-notes-file))
           ("t" "todo"        entry (file+headline ,(concat PATH_ORG_FILES "tasks.org") "Tasks")
            "* TODO %^{Title}\n  %u\n   %?\n")
           ("c" "coding todo" entry (file+headline ,(concat PATH_ORG_FILES "tasks.org") "Tasks")
            "* TODO %^{Title}\n  %u %a\n   %?\n")
           ("p" "project"     entry (file+headline ,(concat PATH_ORG_FILES "tasks.org") "Projects")
            "* TODO %^{Title}   %^g\n  %u\n   %?\n"))))
  ("work_remote"
   (setq org-capture-templates
         `(("n" "note" entry (file org-default-notes-file))
           ("t" "todo" entry (file+headline ,(concat PATH_ORG_FILES "todo.org") "Todos")
            "* TODO %^{Title}\n  %u\n   %?\n")
           ("p" "project" entry (file+headline ,(concat PATH_ORG_FILES "projects.org") "Projekte")
            "* OPEN %^{Title}\n  %u\n** Beschreibung\n    %?\n** Zu erledigen\n*** \n** Verlauf\n*** a\n"))))
)
#+END_SRC

** Org babel languages
   This code block is linux specific. Loading languages which aren't available seems to be a problem.
   New: Load languages on demand. I need to test if this works as intended.
#+BEGIN_SRC emacs-lisp
(defadvice org-babel-execute-src-block (around load-language nil activate)
  "Load language if needed"
  (let ((language (org-element-property :language (org-element-at-point))))
    (unless (cdr (assoc (intern language) org-babel-load-languages))
      (add-to-list 'org-babel-load-languages (cons (intern language) t))
      (org-babel-do-load-languages 'org-babel-load-languages org-babel-load-languages))
    ad-do-it))
#+END_SRC

BEGIN_SRC emacs-lisp
(cond ((eq system-type 'gnu/linux)
 (org-babel-do-load-languages
'org-babel-load-languages
  '(
    (C . t)
    (calc . t)
    (java . t)
    (ipython . t)
    (js . t)
    (latex . t)
    (ledger . t)
    (beancount . t)
    (lisp . t)
    (python . t)
    (R . t)
    (ruby . t)
    (scheme . t)
    (shell . t)
    (sqlite . t)
    )
 ))
)
END_SRC

#+BEGIN_SRC emacs-lisp
(defun my-org-confirm-babel-evaluate (lang body)
    "Do not confirm evaluation for these languages."
    (not (or (string= lang "beancount")
             (string= lang "C")
             (string= lang "emacs-lisp")
             (string= lang "ipython")
             (string= lang "java")
             (string= lang "ledger")
             (string= lang "python")
             (string= lang "R")
             (string= lang "sqlite"))))
(setq org-confirm-babel-evaluate 'my-org-confirm-babel-evaluate)
#+END_SRC

#+BEGIN_SRC emacs-lisp
(add-hook 'org-babel-after-execute-hook 'org-display-inline-images)
(add-hook 'org-mode-hook 'org-display-inline-images)
#+END_SRC

** Org babel/source blocks
   I like to have source blocks properly syntax highlighted and with the editing popup window staying within the same window so all the windows don't jump around. Also, having the top and bottom trailing lines in the block is a waste of space, so we can remove them

   I noticed that fontification doesn't work with markdown mode when the block is indented after editing it in the org src buffer - the leading #s for headers don't get fontified properly because they apppear as Org comments. Setting ~org-src-preserve-identation~ makes things consistent as it doesn't pad source blocks with leading spaces

#+BEGIN_SRC emacs-lisp
   (setq org-src-fontify-natively t
         org-src-window-setup 'current-window
         org-src-strip-leading-and-trailing-blank-lines t
         org-src-preserve-indentation nil                 ; these two lines respect the indentation of
         org-edit-src-content-indentation 0               ; the surrounding text around the source block
         org-src-tab-acts-natively t)
#+END_SRC



** Org babel helper functions
   
* Pandoc
  Convert between formats, like from org to html.
  Pandoc needs to be installed on the system
#+BEGIN_EXAMPLE
sudo apt install pandoc 
#+END_EXAMPLE

  Pandoc-mode is a minor mode to interact with pandoc
#+BEGIN_SRC emacs-lisp
(use-package pandoc-mode
  :ensure t
  :init
  (add-hook 'markdown-mode-hook 'pandoc-mode))
#+END_SRC

* Emails
  Currently following tools are required:
  - notmuch (edit, read, tag, delete emails)
  - isync /mbsync (fetch or sync emails)

  After setting up mbsync, notmuch must be configured. Execute "notmuch" from the command line to launch the setup wizard. After it, "notmuch new" to create a new database, which will index the available local e-mails.

  TODO:
  - setup of mbsync on linux
  - setup of notmuch on linux
  - shell script for installation of isync and notmuch
  - more config for notmuch?
  - hydra for notmuch?
  - maybe org-notmuch?
  - some way to refresh the notmuch db before I run notmuch?

#+BEGIN_SRC emacs-lisp
(unless (string-equal my/whoami "work_remote")
  (use-package notmuch
    :defer t
    :ensure t
  )
)
#+END_SRC

* Personal Finances
  After trying ledger, I chose beancount. It is closer to real bookkeeping and has stricter rules.
  Since there is no debian package, it is an option to install it via pip.
  I picked /opt for the installation path

#+BEGIN_EXAMPLE
sudo su
cd /opt
python3 -m venv beancount
source ./beancount/bin/activate
pip3 install wheel
pip3 install beancount
sleep 100
echo "shell running!"
deactivate
#+END_EXAMPLE

  When using beancount, it will automatically pick the created virtual environment.

  Activate the beancount mode. ATTENTION: This mode is made by myself.

#+BEGIN_SRC emacs-lisp
(unless (string-equal my/whoami "work_remote")
  (load "/home/marc/.emacs.d/user-local/elisp/beancount-mode.el") ; somehow load-path in use-package doesn't work
  (use-package beancount
    :load-path "/home/marc/.emacs.d/elisp"
    :defer t
    :mode ("\\.beancount$" . beancount-mode)
    :init
    (add-hook 'beancount-mode-hook 'company/beancount-mode-hook)
    (setenv "PATH"
          (concat
           "/opt/beancount/bin:"
           (getenv "PATH"))
          )
    :config
    (setq beancount-filename-main "/home/marc/Archiv/Finanzen/Transaktionen/transactions.beancount")
  )
)
#+END_SRC

  To support org-babel, check if it can find the symlink to ob-beancount.el.

#+BEGIN_SRC shell
orgpath=`find /home/marc/.emacs.d/elpa/ -type d -name "org-plus*" -print`
beansym="$orgpath/ob-beancount.el"
bean="/home/marc/Archiv/Programmierprojekte/Lisp/beancount-mode/ob-beancount.el"

if [ -h "$beansym" ]
then
    echo "$beansym found"
elif [ -e "$bean" ]
then
    echo "creating symlink"
    ln -s "$bean" "$beansym"
else
    echo "$bean not found, symlink creation aborted"
fi
#+END_SRC

#+RESULTS:
: /home/marc/.emacs.d/elpa/org-plus-contrib-20180521/ob-beancount.el found


  Installing fava for reports is strongly recommended.

#+BEGIN_EXAMPLE
  cd /opt
  python3 -m venv fava
  source ./fava/bin/activate
  pip3 install wheel
  pip3 install fava
  deactivate
#+END_EXAMPLE

  Start fava with
#+BEGIN_EXAMPLE
  fava my_file.beancount
#+END_EXAMPLE

  It is accessable on this URL: [[http://127.0.0.1:5000][Fava]]
  Beancount-mode can start fava and open the URL right away.
  
* Programming
** Common things
List of plugins and settings which are shared between the language plugins


Highlight whitespaces, tabs, empty lines.

#+BEGIN_SRC emacs-lisp
 (use-package whitespace
   :demand t
   :ensure nil
   :diminish whitespace-mode;;mode shall be active, but not shown in mode line
   :init
   (dolist (hook '(prog-mode-hook
                   text-mode-hook
                   conf-mode-hook))
    (add-hook hook #'whitespace-mode))
;;   :hook ;;not working in use-package 2.3
;;   ((prog-mode . whitespace-turn-on)
;;    (text-mode . whitespace-turn-on))
   :config
   (setq-default whitespace-style '(face empty tab trailing))
 )
#+END_SRC

Disable Eldoc, it interferes with flycheck

#+BEGIN_SRC emacs-lisp
 (use-package eldoc
   :ensure nil
   :config
   (global-eldoc-mode -1)
 )
#+END_SRC

Colorize colors as text with their value
#+BEGIN_SRC emacs-lisp
 (use-package rainbow-mode
   :ensure t
   :init
   (add-hook 'prog-mode-hook 'rainbow-mode t)
   :diminish rainbow-mode
;;   :hook prog-mode ;; not working in use-package 2.3
   :config
   (setq-default rainbow-x-colors-major-mode-list '())
 )
#+END_SRC

Highlight parens etc. for improved readability
#+BEGIN_SRC emacs-lisp
(use-package rainbow-delimiters
  :ensure t
  :config
  (add-hook 'prog-mode-hook 'rainbow-delimiters-mode)
)
#+END_SRC

Treat CamelCase combined words as individual words
#+BEGIN_SRC emacs-lisp
(use-package subword
  :diminish subword-mode
  :config
  (add-hook 'python-mode-hook 'subword-mode))
#+END_SRC

** Smartparens
   Smartparens is a beast on its own, so it's worth having a dedicated section for it
#+BEGIN_SRC emacs-lisp
(use-package smartparens
  :ensure t
  :diminish smartparens-mode
  :config
  (add-hook 'prog-mode-hook 'smartparens-mode)
)
#+END_SRC
** Git
*** Magit
   [[https://magit.vc/manual/magit/index.html][Link]]
   I want to do git stuff here, not in a separate terminal window

   Little crashcourse in magit:
   - magit-init to init a git project
   - magit-status (C-x g) to call the status window

   in status buffer:
   - s   stage files
   - u   unstage files
   - U   unstage all files
   - a   apply changed to staging
   - c c commit (type commit message, then C-c C-c to commit)
   - b b switch to another branch
   - P u git push
   - F u git pull

#+BEGIN_SRC emacs-lisp
(use-package magit
  :ensure t
  :defer t
  :init
  ;; set git-path in work environment
  (if (string-equal user-login-name "POH")
    (setq magit-git-executable "P:/Eigene Dateien/Tools/Git/bin/git.exe")
  )
  :defer t
  :bind (("C-x g" . magit-status))
)
#+END_SRC
*** Git-gutter
   Display line changes in gutter based on git history. Enable it everywhere
   [[https://github.com/syohex/emacs-git-gutter][Source]]
#+BEGIN_SRC emacs-lisp
(use-package git-gutter
  :ensure t
  :defer t
  :config
  (global-git-gutter-mode t)
  :diminish git-gutter-mode
)
#+END_SRC
   
   Some persistent navigation in git-gutter is nice, so here's a hydra for it:
   
#+BEGIN_SRC emacs-lisp
   (defhydra hydra-git-gutter (:body-pre (git-gutter-mode 1)
                                         :hint nil)
  "
^Git Gutter^        ^Git^                ^misc^
^──────────^────────^───^────────────────^────^──────────────────────────
_j_: next hunk      _s_tage hunk         _q_uit
_k_: previous hunk  _r_evert hunk _g_ : call magit-status
_h_: first hunk     _p_opup hunk
_l_: last hunk      set start _R_evision
^^                  ^^                   ^^
"
  ("j" git-gutter:next-hunk)
  ("k" git-gutter:previous-hunk)
  ("h" (progn (goto-char (point-min))
              (git-gutter:next-hunk 1)))
  ("l" (progn (goto-char (point-min))
              (git-gutter:previous-hunk 1)))
  ("s" git-gutter:stage-hunk)
  ("r" git-gutter:revert-hunk)
  ("p" git-gutter:popup-hunk)
  ("R" git-gutter:set-start-revision)
  ("q" nil :color blue)
  ("g" magit-status)
)
#+END_SRC

*** Git-timemachine
   Time machine lets me step through the history of a file as recorded in git.
   [[https://github.com/pidu/git-timemachine][Source]]
#+BEGIN_SRC emacs-lisp
(use-package git-timemachine
  :ensure t
  :defer t
)
#+END_SRC

** Company backend hooks

    Backend configuration for python-mode

    Common backends are:
    - company-files:    files & directory
    - company-keywords: keywords
    - company-capf:     ??
    - company-abbrev:   ??
    - company-dabbrev:  dynamic abbreviations
    - company-ispell:   ??

    So far I cannot differenciate a true python mode and a source block of ipython in org-mode, so the python-mode-hook should include both completion backends.

#+BEGIN_SRC emacs-lisp
 (defun company/python-mode-hook()
   (message "company/python-mode-hook activated")
   (set (make-local-variable 'company-backends)
        '(company-jedi))
;         '((company-jedi company-yasnippet company-dabbrev-code) company-dabbrev))
;        '((company-ob-ipython company-lsp)))
;        '((company-ob-ipython company-jedi)))
;        '((company-jedi company-dabbrev-code company-yasnippet) company-capf company-files))
;        '((company-lsp company-yasnippet) company-capf company-dabbrev company-files))
   (company-mode t)
 )
#+END_SRC

    I have yet to find the proper hook to call this.
#+BEGIN_SRC emacs-lisp
 (defun company/ipython-mode-hook()
   (message "company/ipython-mode-hook activated")
   (set (make-local-variable 'company-backends)
        '((company-ob-ipython)))
   (company-mode t)
 )
#+END_SRC

#+BEGIN_SRC emacs-lisp
(defun company/ess-mode-hook()
  (message "company/ess-mode-hook activated")
;  (set (make-local-variable 'company-backends)
;       '((company-ess-backend company-R-args company-R-objects)))
  (ess-indent-with-fancy-comments nil)
  (company-mode t))
#+END_SRC

     (defun add-pcomplete-to-capf ()
       (add-hook 'completion-at-point-functions 'pcomplete-completions-at-point nil t))
;;     (add-hook 'completion-at-point-functions 'pcomplete-completions-at-point nil t)
     (add-hook 'org-mode-hook #'add-pcomplete-to-capf)

Backend for Orgmode
#+BEGIN_SRC emacs-lisp
(defun company/org-mode-hook()
  (set (make-local-variable 'company-backends)
       '(company-capf company-files))
  (add-hook 'completion-at-point-functions 'pcomplete-completions-at-point nil t)
  (message "company/org-mode-hook")
  (company-mode t)
)
#+END_SRC

Backend configuration for lisp-mode

#+BEGIN_SRC emacs-lisp
 (defun company/elisp-mode-hook()
   (set (make-local-variable 'company-backends)
        '((company-elisp company-dabbrev) company-capf company-files))
   (company-mode t)
 )
#+END_SRC

Backend configuration for beancount

#+BEGIN_SRC emacs-lisp
(defun company/beancount-mode-hook()
  (set (make-local-variable 'company-backends)
       '(company-beancount))
;       '((company-beancount company-dabbrev) company-capf company-files))
  (company-mode t)
)
#+END_SRC

Backend configuration for lua
#+BEGIN_SRC emacs-lisp
(defun company/lua-mode-hook()
  (set (make-local-variable 'company-backends)
       '(company-lua))
  (company-mode t)
)
#+END_SRC

** Misc Company packages

Addon to sort suggestions by usage

#+BEGIN_SRC emacs-lisp
 (use-package company-statistics
     :ensure t
     :after company
     :init
     (setq company-statistics-file (concat PATH_USER_LOCAL "company-statistics-cache.el"));~/.emacs.d/user-dir/company-statistics-cache.el")
     :config
     (company-statistics-mode 1)
 )
#+END_SRC

Get a popup with documentation of the completion candidate.
For the popups the package pos-tip.el is used and automatically installed.
[[https://github.com/expez/company-quickhelp][Company Quickhelp]]
[[https://www.emacswiki.org/emacs/PosTip][See here for Pos-Tip details]]

#+BEGIN_SRC emacs-lisp
 (use-package company-quickhelp
     :ensure t
     :after company
     :config
     (company-quickhelp-mode 1)
 )
#+END_SRC

Maybe add [[https://github.com/hlissner/emacs-company-dict][company-dict]]? It's a dictionary based on major modes, plus it has Yasnippet integration.

** Flycheck
   Show errors right away!
#+BEGIN_SRC emacs-lisp
   (use-package flycheck
       :ensure t
       :diminish flycheck-mode " ✓"
       :init
       (setq flycheck-emacs-lisp-load-path 'inherit)
       (add-hook 'after-init-hook #'global-flycheck-mode)
;       (add-hook 'python-mode-hook (lambda ()
;                                       (semantic-mode 1)
;                                       (flycheck-select-checker 'python-pylint)))
   )
#+END_SRC

** Projectile
   Brings search functions on project level

#+BEGIN_SRC emacs-lisp
(use-package projectile
  :ensure t
  :defer t
  :bind
  (("C-c p p" . projectile-switch-project)
   ("C-c p s s" . projectile-ag))
  :init
  (setq-default
   projectile-cache-file (concat PATH_USER_LOCAL ".projectile-cache")
   projectile-known-projects-file (concat PATH_USER_LOCAL ".projectile-bookmarks"))
  :config
  (projectile-mode t)
  (setq-default
   projectile-completion-system 'ivy
   projectile-enable-caching t
   projectile-mode-line '(:eval (projectile-project-name)))
 )
#+END_SRC

** Yasnippet
   Snippets!
   TODO: yas-minor-mode? what's that?

#+BEGIN_SRC emacs-lisp
(use-package yasnippet
  :ensure t
  :defer t
  :diminish yas-minor-mode
  :init
  (yas-global-mode t)
;;  (setq yas-snippet-dirs '(concat PATH_USER_GLOBAL "snippets"))
  :mode ("\\.yasnippet" . snippet-mode)
  :config
  (unless (string-equal my/whoami "work_remote")  ; very hacky, but yas-reload-all throws a wrongp error at work
    (yas-reload-all)) ;; ensure snippets are updated and available, necessary when not using global-mode
)
#+END_SRC

#+RESULTS:

** Lisp

   Not sure about this one, but dynamic binding gets some bad vibes.
#+BEGIN_SRC emacs-lisp
(setq lexical-binding t)
#+END_SRC

#+BEGIN_SRC emacs-lisp
(add-hook 'emacs-lisp-mode-hook 'company/elisp-mode-hook)
#+END_SRC

Add some helpers to handle and understand macros
#+BEGIN_SRC emacs-lisp
(use-package macrostep
  :ensure t
  :defer t
  :init
  (define-key emacs-lisp-mode-map (kbd "C-c e") 'macrostep-expand)
  (define-key emacs-lisp-mode-map (kbd "C-c c") 'macrostep-collapse))
#+END_SRC

** LUA
   #+BEGIN_SRC emacs-lisp
   (use-package lua-mode
     :ensure t
     :mode (("\\.lua$" . lua-mode))
     :init
     (add-hook 'lua-mode-hook 'company/lua-mode-hook)
   )
   #+END_SRC
** R
   TODO: test it
   For now only enable ESS at home. Not sure if it is useful at work.
   Also I got "locate-file" errors at work; the debugger listet random files not related to anything within the emacs configuraion
#+BEGIN_SRC emacs-lisp
(pcase my/whoami
  ("home"
   (use-package ess-r-mode ;ess-site lädt alle Sprachen (Julia, Stata, S, S+, SAS, BUGS/JAGS
     :ensure ess
;     :load-path "/usr/share/emacs/site-lisp/ess/"
;     :load-path "/home/marc/.emacs.d/elpa/ess-20180825.900/"
     :defer t
     :mode (("\\.R$" . R-mode)
            ("\\.r$" . R-mode))
;     :init (require 'ess-site)
     :commands
     (R-mode)
     :config
     (use-package ess-R-data-view :ensure t)
;     (use-package ess-smart-equals :ensure t) ; requires julia-mode
     (use-package ess-smart-underscore :ensure t)
;     (use-package ess-view :ensure t) ; requires julia-mode
     (setq ess-use-flymake nil
           ess-use-ido nil ;;else ESS will use ido whenever possible
           ess-eval-visibly 'nowait
           ess-ask-for-ess-directory nil
           ess-local-process-name "R"
           ess-use-tracebug t
           ess-indent-with-fancy-comments nil ; otherwise ess indents comments sometimes
           ess-describe-at-point-method 'tooltip))) ; 'tooltip or nil (buffer)
)
#+END_SRC
** Lua
   #+BEGIN_SRC emacs-lisp
   (use-package lua-mode
     :defer t
     :ensure t
     :mode "\\.lua\\'"
     :config
     (setq lua-indent-level 2))
   #+END_SRC
** Python
*** Intro
    Systemwide following packages need to be installed:
    - venv
    - pylint / pylint3 (depending on default python version)
      flycheck complains if no pylint is available and org tries to fontify python code natively.

    The virtual environments need to have following modules installed:
    - wheel (for some reason it isn't pulled by other packages, yet they complain about missing wheel)
    - jedi
    - epc
    - pylint
*** Python-Mode
    Automatically start python-mode when opening a .py-file.
    Not sure if python.el is better than python-mode.el.
    See [[https://github.com/jorgenschaefer/elpy/issues/887][here]] for info about ~python-shell-completion-native-enable~.
    The custom function is to run inferiour processes (do I really need that?), see [[https://emacs.stackexchange.com/questions/16361/how-to-automatically-run-inferior-process-when-loading-major-mode][here]].

    Also limit the completion backends to those which make sense in Python.
   
#+BEGIN_SRC emacs-lisp
(use-package python
    :mode ("\\.py\\'" . python-mode)
    :interpreter ("python" . python-mode)
    :defer t
    :after company-mode
    :init
    (message "python mode init")
    (add-hook 'python-mode-hook (lambda ()
                                  (company/python-mode-hook)
                                  (semantic-mode t)
                                  (flycheck-select-checker 'python-pylint)))
    :config
    (setq python-shell-completion-native-enable nil)
)
#+END_SRC
*** IPython-Mode
    Not sure if this configuraton will interfere with Python-Mode
#+BEGIN_SRC emacs-lisp
(use-package ob-ipython
  :ensure t
  :defer t
  :init
  (add-hook 'ob-ipython-mode-hook (lambda ()
                                    'company/ipython-mode-hook
                                    (semantic-mode t)
                                    (flycheck-select-checker 'pylint))))
#+END_SRC

*** Jedi / Company
    Jedi is a backend for python autocompletion and needs to be installed on the server:
    - pip install jedi
    Code checks need to be installed, too:
    - pip install flake8

    If jedi doesn't work, it might be a problem with jediepcserver.py.
    See [[https://github.com/tkf/emacs-jedi/issues/293][here]]
    To fix it:
    - Figure out which jediepcserver is running (first guess is melpa/jedi-core../jediepcserver.py
    - Change some code:

#+BEGIN_SRC python
100   return dict(
101     # p.get_code(False) should do the job. But jedi-vim use replace.
102     # So follow what jedi.vim does...
103 -   params=[p.get_code().replace('\n', '') for p in call_def.params],
103 +   params=[p.name for p in call_def.params],
104     index=call-def.index,
105 -   call_name=call_def.call_name,
105 +   call_name=call_def.name,
106   )
#+END_SRC

#+BEGIN_SRC emacs-lisp
 (use-package company-jedi
     :defer t
;;     :after company
     :ensure t
     :config
     (setq jedi:environment-virtualenv (list (expand-file-name "~/Archiv/Programmierprojekte/Python/virtualenv/")))
     (setq jedi:python-environment-directory (list (expand-file-name "~/Archiv/Programmierprojekte/Python/virtualenv/")))
     (add-hook 'python-mode-hook 'jedi:setup)
     (setq jedi:complete-on-dot t)
     (setq jedi:use-shortcuts t)
;;     (add-hook 'python-mode-hook 'company/python-mode-hook)
 )
#+END_SRC

*** Virtual Environments
    A wrapper to handle virtual environments.
    I strongly recommend to install virtual environments on the terminal, not through this wrapper, but changing venvs is fine.

    TODO: automatically start an inferior python process or switch to it if already created

#+BEGIN_SRC emacs-lisp
 (use-package pyvenv
     :ensure t
     :defer t
     :init
     (setenv "WORKON_HOME" (expand-file-name "~/Archiv/Programmierprojekte/Python/virtualenv/"))
     :config
     (pyvenv-mode t)
     (defun my/pyvenv-post-activate-hook()
;         (setq jedi:environment-root pyvenv-virtual-env)
;         (setq jedi:environment-virtualenv pyvenv-virtual-env)
;         (setq jedi:tooltip-method '(nil)) ;; variants: nil or pos-tip and/or popup
         (setq python-shell-virtualenv-root pyvenv-virtual-env)
         ;; default traceback, other option M-x jedi:toggle-log-traceback
         ;; traceback is in  jedi:pop-to-epc-buffer
;         (jedi:setup)
;;         (company/python-mode-hook)
;         (setq jedi:server-args '("--log-traceback"))
         (message "pyvenv-post-activate-hook activated"))
     (add-hook 'pyvenv-post-activate-hooks 'my/pyvenv-post-activate-hook)
 )
#+END_SRC

    I want Emacs to automatically start the proper virtual environment.
    Required is a .python-version file with, content in the first line being /path/to/virtualenv/
    [[https://github.com/marcwebbie/auto-virtualenv][Github source]]

    Depends on pyvenv
#+BEGIN_SRC emacs-lisp
 (use-package auto-virtualenv
     :ensure t
;;     :after pyvenv
     :defer t
     :init
     (add-hook 'python-mode-hook 'auto-virtualenv-set-virtualenv)
     ;; activate on changing buffers
     ;; (add-hook 'window-configuration-change-hook 'auto-virtualenv-set-virtualenv)
     ;; activate on focus in
     ;; (add-hook 'focus-in-hook 'auto-virtualenv-set-virtualenv)
 )
#+END_SRC

*** Visuals
    Highlight indentations

#+BEGIN_SRC emacs-lisp
(use-package highlight-indentation
  :ensure t
  :init
  (add-hook 'python-mode-hook 'highlight-indentation-current-column-mode)
  (add-hook 'python-mode-hook 'highlight-indentation-mode)
  :config
  (set-face-background 'highlight-indentation-face "#454545")
  (set-face-background 'highlight-indentation-current-column-face "#656565"))
#+END_SRC
*** Python language server (inactive)
    On python side following needs to be installed:
    - python-language-server[all]
    
    First test for lsp-python.
    Some intro: [[https://vxlabs.com/2018/06/08/python-language-server-with-emacs-and-lsp-mode/][Intro]]
    Source python language server: [[https://github.com/palantir/python-language-server][Link]]
    Source lsp-mode:
    Source lsp-python: [[https://github.com/emacs-lsp/lsp-python][Link]]
    Source company-lsp: [[https://github.com/tigersoldier/company-lsp][Link]]
    Source lsp-ui: [[https://github.com/emacs-lsp/lsp-ui][Link]]

BEGIN_SRC emacs-lisp
(use-package lsp-mode
  :ensure t
  :config
  ;; make sure we have lsp-imenu everywhere we have lsp
  (require 'lsp-imenu)
  (add-hook 'lsp-after-open-hook 'lsp-enable-imenu)
  ;; get lsp-python-enable defined
  ;; nb: use either projectile-project-root or ffip-get-project-root-directory
  ;;     or any other function that can be used to find the root dir of a project
  (lsp-define-stdio-client lsp-python "python"
                           #'projectile-project-root
                           '("pyls"))
  ;; make sure this is activated when python-mode is activated
  ;; lsp-python-enable is created by macro above
  (add-hook 'python-mode-hook
            (lambda ()
              (lsp-python-enable)
              (company/python-mode-hook)))
  ;; lsp extras
  (use-package lsp-ui
    :ensure t
    :config
    (setq lsp-ui-sideline-ignore-duplicate t)
    (add-hook 'lsp-mode-hook 'lsp-ui-mode))

  (use-package company-lsp
    :ensure t)
;    :config
;    (push 'company-lsp company-backends))

  ;; NB: only required if you prefer flake8 instead of the default
  ;; send pyls config via lsp-after-initialize-hook -- harmless for
  ;; other servers due to pyls key, but would prefer only sending this
  ;; when pyls gets initialised (:initialize function in
  ;; lsp-define-stdio-client is invoked too early (before server
  ;; start))
  (defun lsp-set-cfg ()
    (let ((lsp-cfg `(:pyls (:configurationSources ("flake8")))))
      ;; TODO: check lsp--cur-workspace here to decide per server / project
      (lsp--set-configuration lsp-cfg)))

  (add-hook 'lsp-after-initialize-hook 'lsp-set-cfg)
)
END_SRC
BEGIN_SRC emacs-lisp
(use-package lsp-mode
  :ensure t
  :defer t)

(add-hook 'lsp-mode-hook #'(lambda ()
                             (customize-set-variable 'lsp-enable-eldoc nil)
                             (flycheck-mode 1)
                             (company-mode 1)))

(use-package lsp-ui
  :ensure t
  :defer t)

(use-package company-lsp
  :ensure t
  :defer t)

(use-package lsp-python
  :ensure t
  :after lsp-mode
  :defer t
  :init
  (add-hook 'python-mode-hook #'(lambda ()
                                (lsp-python-enable)
                                (flycheck-select-checker 'python-flake8))))

END_SRC
** Latex
   Requirements for Debian:
   - texlive (texlive-base?)
   - elpa-pdf-tools
   - dh-autoreconf?

   Recommended:
   - texlive-lang-german
   - texlive-latex-extra

   The midnight mode hook is disabled for now, because CVs with my pic just look weird in this mode.

#+BEGIN_SRC emacs-lisp
(unless (string-equal my/whoami "work_remote")
  (use-package pdf-tools
    :ensure t
    :defer t
    :mode (("\\.pdf\\'" . pdf-view-mode))
    :init
;    (add-hook 'pdf-view-mode-hook 'pdf-view-midnight-minor-mode)
    :config
    (pdf-tools-install)
    (setq pdf-view-resize-factor 1.1  ;; more finegraned zoom
          pdf-view-midnight-colors '("#c6c6c6" . "#363636")
          TeX-view-program-selection '((output-pdf "pdf-tools"))
          TeX-view-program-list '(("pdf-tools" "Tex-pdf-tools-sync-view")))
  )
)
#+END_SRC

   For latex-preview-pane a patch might be necessary (as of 2017-10), see the issue [[https://github.com/jsinglet/latex-preview-pane/issues/37][here]].
   Without it, the preview pane won't update, even when compiling works fine.
#+BEGIN_SRC
       latex-preview-pane-update-p()
   ---  (doc-view-revert-buffer nil t)
   +++  (revert-buffer nil t 'preserve-modes)
#+END_SRC
   After that M-x byte-compile-file

#+BEGIN_SRC emacs-lisp
(use-package latex-preview-pane
  :ensure t
  :defer t
  :init
  ;; one of these works
  (add-hook 'LaTeX-mode-hook 'latex-preview-pane-mode)
  (add-hook 'latex-mode-hook 'latex-preview-pane-mode)
  (setq auto-mode-alist
        (append '(("\\.tex$" . latex-mode)) auto-mode-alist))
)

;; necessary, because linum-mode isn't compatible and prints errors
(add-hook 'pdf-view-mode-hook (lambda () (linum-mode -1)))
#+END_SRC

** Markdown
   Major mode to edit markdown files.
   For previews it needs markdown installed on the system.
   For debian:
#+BEGIN_EXAMPLE
   sudo apt install markdown 
#+END_EXAMPLE

#+BEGIN_SRC emacs-lisp
   (use-package markdown-mode
     :ensure t
     :defer t)  
#+END_SRC

** Config languages
#+BEGIN_SRC emacs-lisp
(use-package nginx-mode
  :ensure t
  :defer t)
#+END_SRC
** Hydra Flycheck
Flycheck is necessary, obviously

#+BEGIN_SRC emacs-lisp
 (defhydra hydra-flycheck (:color blue)

  "
^
^Flycheck^          ^Errors^            ^Checker^
^────────^──────────^──────^────────────^───────^───────────
_q_ quit _<_ previous _?_ describe
_m_ manual _>_ next _d_ disable
_v_ verify setup _f_ check _s_ select
^^                  ^^                  ^^
"
     ("q" nil)
     ("<" flycheck-previous-error :color red)
     (">" flycheck-next-error :color red)
     ("?" flycheck-describe-checker)
     ("d" flycheck-disable-checker)
     ("f" flycheck-buffer)
     ("m" flycheck-manual)
     ("s" flycheck-select-checker)
     ("v" flycheck-verify-setup)
 )
#+END_SRC



* Orchestrate the configuration
  Some settings should be set for all systems, some need to be specific (like my job-emacs doesn't need development tools).

** Common

** Home

** Work
   I mainly only use org
** Work, Hyper-V
   For testing purproses I keep a working emacs in a debian on hyper-v. The demands here are different to the other work-emacs

* Finishing
  Stuff which I want to run in the end

#+BEGIN_SRC emacs-lisp
(message (emacs-init-time))
#+END_SRC